IL_9AZC_038

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9AZC|1|L5|G|748, 9AZC|1|L5|C|916

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_038 not in the Motif Atlas

Geometric match to IL_8CRE_022

Geometric discrepancy: 0.1426

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9AZC|1|L5|G|745
9AZC|1|L5|A|746
9AZC|1|L5|A|747
9AZC|1|L5|G|748
9AZC|1|L5|G|749
9AZC|1|L5|U|750
9AZC|1|L5|G|751
9AZC|1|L5|G|752
*
9AZC|1|L5|U|911
9AZC|1|L5|G|912
9AZC|1|L5|U|913
9AZC|1|L5|U|914
9AZC|1|L5|A|915
9AZC|1|L5|C|916
9AZC|1|L5|A|917
9AZC|1|L5|G|918
9AZC|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a