IL_9AZC_106
3D structure
- PDB id
- 9AZC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome (Consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZC_106 not in the Motif Atlas
- Homologous match to IL_8CRE_079
- Geometric discrepancy: 0.0749
- The information below is about IL_8CRE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22829.2
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9AZC|1|L5|A|2832
9AZC|1|L5|A|2833
9AZC|1|L5|C|2834
9AZC|1|L5|A|2835
9AZC|1|L5|A|2836
9AZC|1|L5|U|2837
9AZC|1|L5|G|2838
*
9AZC|1|L5|C|3850
9AZC|1|L5|U|3851
9AZC|1|L5|A|3852
9AZC|1|L5|U|3853
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LP
- 60S ribosomal protein L17
- Chain Ld
- 60S ribosomal protein L31
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