IL_9AZM_008

3D structure

PDB id

9AZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human ribosome (Focused on 40S with SERBP1 CTD)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZM_008 not in the Motif Atlas

Homologous match to IL_8CRE_450

Geometric discrepancy: 0.242

The information below is about IL_8CRE_450

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55553.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

9AZM|1|S2|A|1291
9AZM|1|S2|C|1292
9AZM|1|S2|A|1293
*
9AZM|1|S2|U|1306
9AZM|1|S2|U|1307
9AZM|1|S2|U|1308

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

Serbp1

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a