IL_9AZN_120

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

9AZN|1|L5|A|3711, 9AZN|1|L5|A|3712, 9AZN|1|L5|U|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZN_120 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3478

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9AZN|1|L5|G|3710
9AZN|1|L5|A|3711
9AZN|1|L5|A|3712
9AZN|1|L5|U|3713
9AZN|1|L5|G|3714
*
9AZN|1|L5|C|3739
9AZN|1|L5|G|3740
9AZN|1|L5|C|3741

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain PE

Transfer RNA; tRNA

Chain S3

Small subunit ribosomal RNA; SSU rRNA