IL_9AZN_155

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZN_155 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.1224

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

9AZN|1|L5|U|4638
9AZN|1|L5|G|4639
9AZN|1|L5|C|4640
*
9AZN|1|L5|G|4659
9AZN|1|L5|G|4660
9AZN|1|L5|G|4661

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31