IL_9AZN_210
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZN_210 not in the Motif Atlas
- Homologous match to IL_8CRE_421
- Geometric discrepancy: 0.1521
- The information below is about IL_8CRE_421
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
9AZN|1|S3|A|599
9AZN|1|S3|G|600
9AZN|1|S3|G|601
9AZN|1|S3|G|602
9AZN|1|S3|C|603
9AZN|1|S3|A|604
9AZN|1|S3|A|605
9AZN|1|S3|G|606
*
9AZN|1|S3|C|636
9AZN|1|S3|U|637
Current chains
- Chain S3
- 18S rRNA
Nearby chains
- Chain CH
- EDF1
- Chain SC
- 40S ribosomal protein S2
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- 40S ribosomal protein S30
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