IL_9AZN_212
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9AZN|1|S3|A|628, 9AZN|1|S3|U|630, 9AZN|1|S3|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZN_212 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.1786
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9AZN|1|S3|G|611
9AZN|1|S3|U|612
9AZN|1|S3|G|613
9AZN|1|S3|C|614
9AZN|1|S3|C|615
9AZN|1|S3|A|616
9AZN|1|S3|G|617
*
9AZN|1|S3|C|624
9AZN|1|S3|G|625
9AZN|1|S3|G|626
9AZN|1|S3|U|627
9AZN|1|S3|A|628
9AZN|1|S3|A|629
9AZN|1|S3|U|630
9AZN|1|S3|U|631
9AZN|1|S3|C|632
Current chains
- Chain S3
- 18S rRNA
Nearby chains
- Chain AP
- Transfer RNA; tRNA
- Chain CH
- EDF1
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
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