IL_9AZN_238

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZN_238 not in the Motif Atlas

Homologous match to IL_8P9A_433

Geometric discrepancy: 0.1004

The information below is about IL_8P9A_433

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

9AZN|1|S3|G|1235
9AZN|1|S3|G|1236
*
9AZN|1|S3|C|1521
9AZN|1|S3|A|1522
9AZN|1|S3|C|1523

Current chains

Chain S3

18S rRNA

Nearby chains

Chain AP

Transfer RNA; tRNA

Chain PE

Transfer RNA; tRNA

Chain SP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18