IL_9AZN_240
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 9AZN|1|S3|G|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZN_240 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3253
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9AZN|1|S3|G|1281
9AZN|1|S3|A|1282
9AZN|1|S3|C|1283
9AZN|1|S3|A|1284
9AZN|1|S3|G|1285
9AZN|1|S3|G|1286
9AZN|1|S3|A|1287
9AZN|1|S3|U|1288
9AZN|1|S3|U|1289
9AZN|1|S3|G|1290
*
9AZN|1|S3|C|1309
9AZN|1|S3|U|1310
9AZN|1|S3|C|1311
9AZN|1|S3|G|1312
9AZN|1|S3|A|1313
9AZN|1|S3|U|1314
9AZN|1|S3|U|1315
9AZN|1|S3|C|1316
Current chains
- Chain S3
- 18S rRNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain SM
- Small ribosomal subunit protein eS12
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
Coloring options: