3D structure

PDB id
9AZN (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human A/P-P/E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.98 Å

Loop

Sequence
UGG*UCUGUGA
Length
10 nucleotides
Bulged bases
9AZN|1|S3|U|1494, 9AZN|1|S3|G|1497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9AZN_245 not in the Motif Atlas
Homologous match to IL_8P9A_440
Geometric discrepancy: 0.1511
The information below is about IL_8P9A_440
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_93811.1
Basepair signature
cWW-tHS-L-R-cWW-L
Number of instances in this motif group
3

Unit IDs

9AZN|1|S3|U|1333
9AZN|1|S3|G|1334
9AZN|1|S3|G|1335
*
9AZN|1|S3|U|1492
9AZN|1|S3|C|1493
9AZN|1|S3|U|1494
9AZN|1|S3|G|1495
9AZN|1|S3|U|1496
9AZN|1|S3|G|1497
9AZN|1|S3|A|1498

Current chains

Chain S3
18S rRNA

Nearby chains

Chain CH
EDF1
Chain SD
Small ribosomal subunit protein uS3
Chain SK
40S ribosomal protein S10
Chain SU
40S ribosomal protein S20
Chain Sd
40S ribosomal protein S29

Coloring options:


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