IL_9AZN_245
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 9AZN|1|S3|U|1494, 9AZN|1|S3|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZN_245 not in the Motif Atlas
- Homologous match to IL_8P9A_440
- Geometric discrepancy: 0.1511
- The information below is about IL_8P9A_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
9AZN|1|S3|U|1333
9AZN|1|S3|G|1334
9AZN|1|S3|G|1335
*
9AZN|1|S3|U|1492
9AZN|1|S3|C|1493
9AZN|1|S3|U|1494
9AZN|1|S3|G|1495
9AZN|1|S3|U|1496
9AZN|1|S3|G|1497
9AZN|1|S3|A|1498
Current chains
- Chain S3
- 18S rRNA
Nearby chains
- Chain CH
- EDF1
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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