3D structure

PDB id
9AZN (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human A/P-P/E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.98 Å

Loop

Sequence
UGG*CGA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9AZN_247 not in the Motif Atlas
Homologous match to IL_8P9A_442
Geometric discrepancy: 0.1119
The information below is about IL_8P9A_442
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10892.1
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
39

Unit IDs

9AZN|1|S3|U|1347
9AZN|1|S3|G|1348
9AZN|1|S3|G|1349
*
9AZN|1|S3|C|1380
9AZN|1|S3|G|1381
9AZN|1|S3|A|1382

Current chains

Chain S3
18S rRNA

Nearby chains

Chain SA
40S ribosomal protein SA
Chain SC
40S ribosomal protein S2
Chain SD
Small ribosomal subunit protein uS3
Chain SR
40S ribosomal protein S17

Coloring options:


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