IL_9AZN_258

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9AZN|1|S3|C|1701, 9AZN|1|S3|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZN_258 not in the Motif Atlas

Homologous match to IL_8P9A_452

Geometric discrepancy: 0.1258

The information below is about IL_8P9A_452

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9AZN|1|S3|C|1700
9AZN|1|S3|C|1701
9AZN|1|S3|G|1702
*
9AZN|1|S3|C|1833
9AZN|1|S3|A|1834
9AZN|1|S3|A|1835
9AZN|1|S3|G|1836

Current chains

Chain S3

18S rRNA

Nearby chains

Chain PE

Transfer RNA; tRNA

Chain Sa

40S ribosomal protein S26