IL_9AZN_263

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZN_263 not in the Motif Atlas

Homologous match to IL_8CRE_471

Geometric discrepancy: 0.1063

The information below is about IL_8CRE_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9AZN|1|S3|C|1717
9AZN|1|S3|G|1718
9AZN|1|S3|A|1719
9AZN|1|S3|U|1720
*
9AZN|1|S3|A|1813
9AZN|1|S3|G|1814
9AZN|1|S3|A|1815
9AZN|1|S3|G|1816

Current chains

Chain S3

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41