IL_9B00_387

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

9B00|1|2A|U|2132, 9B00|1|2A|A|2135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_387 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4581

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

9B00|1|2A|C|2129
9B00|1|2A|U|2130
9B00|1|2A|G|2131
9B00|1|2A|U|2132
9B00|1|2A|G|2133
9B00|1|2A|A|2134
9B00|1|2A|A|2135
9B00|1|2A|C|2136
*
9B00|1|2A|G|2155
9B00|1|2A|G|2156
9B00|1|2A|G|2157
9B00|1|2A|A|2158
9B00|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains