IL_9B0F_165

3D structure

PDB id

9B0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class3 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

9B0F|1|L5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0F_165 not in the Motif Atlas

Homologous match to IL_8P9A_359

Geometric discrepancy: 0.186

The information below is about IL_8P9A_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9B0F|1|L5|G|5000
9B0F|1|L5|U|5001
9B0F|1|L5|U|5002
*
9B0F|1|L5|G|5045
9B0F|1|L5|U|5046
9B0F|1|L5|C|5047
9B0F|1|L5|A|5048
9B0F|1|L5|G|5049
9B0F|1|L5|C|5050

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LW

Ribosomal protein L24

Chain Ld

60S ribosomal protein L31