IL_9B0G_081

3D structure

PDB id

9B0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

9B0G|1|L5|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0G_081 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.2267

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9B0G|1|L5|G|1973
9B0G|1|L5|U|1974
9B0G|1|L5|G|1975
9B0G|1|L5|G|1976
9B0G|1|L5|C|1977
*
9B0G|1|L5|G|1989
9B0G|1|L5|A|1990
9B0G|1|L5|A|1991
9B0G|1|L5|U|1992
9B0G|1|L5|C|1993

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Lt

60S ribosomal protein L12 [Homo sapiens]