IL_9B0N_096

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

9B0N|1|L5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0N_096 not in the Motif Atlas

Homologous match to IL_8CRE_066

Geometric discrepancy: 0.3353

The information below is about IL_8CRE_066

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9B0N|1|L5|U|2415
9B0N|1|L5|G|2416
9B0N|1|L5|A|2417
9B0N|1|L5|A|2418
9B0N|1|L5|C|2419
*
9B0N|1|L5|G|2427
9B0N|1|L5|A|2428
9B0N|1|L5|A|2429

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L39