IL_9B0N_161

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0N_161 not in the Motif Atlas

Geometric match to IL_8CRE_440

Geometric discrepancy: 0.2336

The information below is about IL_8CRE_440

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9B0N|1|L5|G|4743
9B0N|1|L5|A|4744
9B0N|1|L5|G|4745
9B0N|1|L5|C|4746
*
9B0N|1|L5|G|4954
9B0N|1|L5|A|4955
9B0N|1|L5|A|4956
9B0N|1|L5|C|4957

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA