IL_9B0N_171

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0N_171 not in the Motif Atlas

Geometric match to IL_3D0U_006

Geometric discrepancy: 0.1019

The information below is about IL_3D0U_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

9B0N|1|L5|G|4992
9B0N|1|L5|G|4993
9B0N|1|L5|G|4994
*
9B0N|1|L5|C|5057
9B0N|1|L5|A|5058
9B0N|1|L5|C|5059

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Ld

60S ribosomal protein L31