IL_9B0P_207

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

9B0P|1|S2|A|536

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_207 not in the Motif Atlas

Geometric match to IL_1J9H_005

Geometric discrepancy: 0.2648

The information below is about IL_1J9H_005

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9B0P|1|S2|G|535
9B0P|1|S2|A|536
9B0P|1|S2|C|537
*
9B0P|1|S2|G|546
9B0P|1|S2|G|547
9B0P|1|S2|C|548

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

Small ribosomal subunit protein eS30