IL_9B0Q_470
3D structure
- PDB id
- 9B0Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-back di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9B0Q|1|s2|U|361, 9B0Q|1|s2|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0Q_470 not in the Motif Atlas
- Homologous match to IL_8P9A_391
- Geometric discrepancy: 0.0921
- The information below is about IL_8P9A_391
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9B0Q|1|s2|U|359
9B0Q|1|s2|A|360
9B0Q|1|s2|U|361
9B0Q|1|s2|C|362
9B0Q|1|s2|A|363
9B0Q|1|s2|A|364
*
9B0Q|1|s2|U|396
9B0Q|1|s2|G|397
9B0Q|1|s2|A|398
9B0Q|1|s2|C|399
9B0Q|1|s2|C|400
9B0Q|1|s2|A|401
9B0Q|1|s2|C|402
9B0Q|1|s2|G|403
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain sI
- 40S ribosomal protein S8
- Chain sL
- 40S ribosomal protein S11
- Chain sX
- 40S ribosomal protein S23
Coloring options: