IL_9B0Q_488
3D structure
- PDB id
- 9B0Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-back di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0Q_488 not in the Motif Atlas
- Homologous match to IL_8CRE_426
- Geometric discrepancy: 0.1077
- The information below is about IL_8CRE_426
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9B0Q|1|s2|C|676
9B0Q|1|s2|G|677
9B0Q|1|s2|U|678
9B0Q|1|s2|A|679
9B0Q|1|s2|G|680
*
9B0Q|1|s2|U|1025
9B0Q|1|s2|C|1026
9B0Q|1|s2|A|1027
9B0Q|1|s2|A|1028
9B0Q|1|s2|G|1029
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain l5
- Large subunit ribosomal RNA; LSU rRNA
- Chain sL
- 40S ribosomal protein S11
- Chain sN
- 40S ribosomal protein S13
- Chain sX
- 40S ribosomal protein S23
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