3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGC*GG
Length
5 nucleotides
Bulged bases
9B0S|1|L5|G|1919
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B0S_080 not in the Motif Atlas
Geometric match to IL_8TSV_002
Geometric discrepancy: 0.373
The information below is about IL_8TSV_002
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

9B0S|1|L5|U|1918
9B0S|1|L5|G|1919
9B0S|1|L5|C|1920
*
9B0S|1|L5|G|2063
9B0S|1|L5|G|2064

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LF
60S ribosomal protein L7
Chain LO
60S ribosomal protein L13a
Chain LS
60S ribosomal protein L18a
Chain Lf
60S ribosomal protein L35a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.137 s