IL_9B0S_085

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9B0S|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_085 not in the Motif Atlas

Homologous match to IL_8CRE_057

Geometric discrepancy: 0.2217

The information below is about IL_8CRE_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9B0S|1|L5|U|1957
9B0S|1|L5|A|1958
9B0S|1|L5|U|1959
9B0S|1|L5|A|1960
9B0S|1|L5|G|1961
9B0S|1|L5|A|1962
9B0S|1|L5|C|1963
9B0S|1|L5|A|1964
9B0S|1|L5|G|1965
*
9B0S|1|L5|C|2022
9B0S|1|L5|C|2023
9B0S|1|L5|G|2024
9B0S|1|L5|A|2025
9B0S|1|L5|A|2026

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain Lm

Large ribosomal subunit protein eL40

Chain Ls

60S acidic ribosomal protein P0