3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAG*CGUG
Length
7 nucleotides
Bulged bases
9B0S|1|L5|U|2687
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B0S_104 not in the Motif Atlas
Geometric match to IL_4V9F_076
Geometric discrepancy: 0.1847
The information below is about IL_4V9F_076
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_87316.1
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
12

Unit IDs

9B0S|1|L5|C|2646
9B0S|1|L5|A|2647
9B0S|1|L5|G|2648
*
9B0S|1|L5|C|2685
9B0S|1|L5|G|2686
9B0S|1|L5|U|2687
9B0S|1|L5|G|2688

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain Lg
60S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6888 s