IL_9B0S_107

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_107 not in the Motif Atlas

Homologous match to IL_8CRE_079

Geometric discrepancy: 0.1199

The information below is about IL_8CRE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22829.2

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9B0S|1|L5|A|2832
9B0S|1|L5|A|2833
9B0S|1|L5|C|2834
9B0S|1|L5|A|2835
9B0S|1|L5|A|2836
9B0S|1|L5|U|2837
9B0S|1|L5|G|2838
*
9B0S|1|L5|C|3850
9B0S|1|L5|U|3851
9B0S|1|L5|A|3852
9B0S|1|L5|U|3853

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31