IL_9B0S_123

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

9B0S|1|L5|A|3712, 9B0S|1|L5|U|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_123 not in the Motif Atlas

Geometric match to IL_8P9A_444

Geometric discrepancy: 0.3667

The information below is about IL_8P9A_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9B0S|1|L5|G|3710
9B0S|1|L5|A|3711
9B0S|1|L5|A|3712
9B0S|1|L5|U|3713
9B0S|1|L5|G|3714
*
9B0S|1|L5|C|3739
9B0S|1|L5|G|3740
9B0S|1|L5|C|3741

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain Et

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA