IL_9B0S_159

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

9B0S|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_159 not in the Motif Atlas

Homologous match to IL_8P9A_348

Geometric discrepancy: 0.2148

The information below is about IL_8P9A_348

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9B0S|1|L5|A|4681
9B0S|1|L5|U|4682
9B0S|1|L5|U|4683
9B0S|1|L5|A|4684
9B0S|1|L5|U|4685
*
9B0S|1|L5|A|4705
9B0S|1|L5|G|4706
9B0S|1|L5|A|4707
9B0S|1|L5|A|4708
9B0S|1|L5|U|4709

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Large ribosomal subunit protein eL40