IL_9B0S_164

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_164 not in the Motif Atlas

Geometric match to IL_8P9A_413

Geometric discrepancy: 0.168

The information below is about IL_8P9A_413

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9B0S|1|L5|G|4769
9B0S|1|L5|U|4770
9B0S|1|L5|C|4771
*
9B0S|1|L5|G|4863
9B0S|1|L5|U|4864
9B0S|1|L5|C|4865

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a