IL_9B0S_199

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_199 not in the Motif Atlas

Geometric match to IL_7A0S_087

Geometric discrepancy: 0.3449

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9B0S|1|S2|C|188
9B0S|1|S2|U|189
9B0S|1|S2|G|190
9B0S|1|S2|A|191
9B0S|1|S2|C|192
*
9B0S|1|S2|G|207
9B0S|1|S2|G|208
9B0S|1|S2|A|209
9B0S|1|S2|U|210
9B0S|1|S2|G|211

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SI

40S ribosomal protein S8