3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAC*GG
Length
5 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B0S_203 not in the Motif Atlas
Geometric match to IL_5J7L_044
Geometric discrepancy: 0.3976
The information below is about IL_5J7L_044
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

9B0S|1|S2|C|317
9B0S|1|S2|A|318
9B0S|1|S2|C|319
*
9B0S|1|S2|G|332
9B0S|1|S2|G|333

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SG
40S ribosomal protein S6

Coloring options:


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