IL_9B0S_208

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_208 not in the Motif Atlas

Homologous match to IL_8CRE_412

Geometric discrepancy: 0.0903

The information below is about IL_8CRE_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

9B0S|1|S2|C|459
9B0S|1|S2|A|460
9B0S|1|S2|U|461
*
9B0S|1|S2|A|468
9B0S|1|S2|A|469
9B0S|1|S2|G|470

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6