IL_9B0S_212
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AAU*AAUU
- Length
- 7 nucleotides
- Bulged bases
- 9B0S|1|S2|U|556
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_212 not in the Motif Atlas
- Geometric match to IL_4M4O_001
- Geometric discrepancy: 0.2081
- The information below is about IL_4M4O_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
9B0S|1|S2|A|528
9B0S|1|S2|A|529
9B0S|1|S2|U|530
*
9B0S|1|S2|A|554
9B0S|1|S2|A|555
9B0S|1|S2|U|556
9B0S|1|S2|U|557
Current chains
- Chain S2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- Small ribosomal subunit protein eS30
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