3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUGCCAG*CGGUAAUUC
Length
16 nucleotides
Bulged bases
9B0S|1|S2|U|627, 9B0S|1|S2|A|628, 9B0S|1|S2|U|630, 9B0S|1|S2|U|631
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B0S_218 not in the Motif Atlas
Homologous match to IL_8P9A_404
Geometric discrepancy: 0.1567
The information below is about IL_8P9A_404
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_52042.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

9B0S|1|S2|G|611
9B0S|1|S2|U|612
9B0S|1|S2|G|613
9B0S|1|S2|C|614
9B0S|1|S2|C|615
9B0S|1|S2|A|616
9B0S|1|S2|G|617
*
9B0S|1|S2|C|624
9B0S|1|S2|G|625
9B0S|1|S2|G|626
9B0S|1|S2|U|627
9B0S|1|S2|A|628
9B0S|1|S2|A|629
9B0S|1|S2|U|630
9B0S|1|S2|U|631
9B0S|1|S2|C|632

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain AT
Transfer RNA; tRNA
Chain SD
Small ribosomal subunit protein uS3
Chain SX
40S ribosomal protein S23
Chain Se
Small ribosomal subunit protein eS30

Coloring options:


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