IL_9B0S_286
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_286 not in the Motif Atlas
- Geometric match to IL_1Z7F_006
- Geometric discrepancy: 0.1182
- The information below is about IL_1Z7F_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
9B0S|1|l5|G|16
9B0S|1|l5|A|17
9B0S|1|l5|C|18
*
9B0S|1|l8|G|139
9B0S|1|l8|C|140
9B0S|1|l8|C|141
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
- Chain l8
- 5.8S rRNA [Homo sapiens]
Nearby chains
- Chain lN
- 60S ribosomal protein L15
- Chain lX
- 60S ribosomal protein L23a
- Chain lh
- 60S ribosomal protein L35
- Chain lj
- 60S ribosomal protein L37
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