IL_9B0S_338

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_338 not in the Motif Atlas

Homologous match to IL_8P9A_255

Geometric discrepancy: 0.0785

The information below is about IL_8P9A_255

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9B0S|1|l5|C|1520
9B0S|1|l5|C|1521
9B0S|1|l5|G|1522
*
9B0S|1|l5|C|1655
9B0S|1|l5|U|1656
9B0S|1|l5|G|1657

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lC

60S ribosomal protein L4

Chain la

60S ribosomal protein L27a