IL_9B0S_366

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9B0S|1|l5|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_366 not in the Motif Atlas

Homologous match to IL_8P9A_281

Geometric discrepancy: 0.1103

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9B0S|1|l5|G|1946
9B0S|1|l5|U|1947
9B0S|1|l5|G|1948
*
9B0S|1|l5|C|2035
9B0S|1|l5|C|2036

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain l7

5S ribosomal RNA; 5S rRNA

Chain lH

60S ribosomal protein L9

Chain lS

60S ribosomal protein L18a

Chain lm

Large ribosomal subunit protein eL40