IL_9B0S_379

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_379 not in the Motif Atlas

Geometric match to IL_7TZS_003

Geometric discrepancy: 0.3184

The information below is about IL_7TZS_003

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

9B0S|1|l5|A|2477
9B0S|1|l5|C|2478
9B0S|1|l5|G|2479
*
9B0S|1|l5|C|2499
9B0S|1|l5|U|2500

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lX

60S ribosomal protein L23a