IL_9B0S_389
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_389 not in the Motif Atlas
- Homologous match to IL_8CRE_079
- Geometric discrepancy: 0.1013
- The information below is about IL_8CRE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22829.2
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9B0S|1|l5|A|2832
9B0S|1|l5|A|2833
9B0S|1|l5|C|2834
9B0S|1|l5|A|2835
9B0S|1|l5|A|2836
9B0S|1|l5|U|2837
9B0S|1|l5|G|2838
*
9B0S|1|l5|C|3850
9B0S|1|l5|U|3851
9B0S|1|l5|A|3852
9B0S|1|l5|U|3853
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain lB
- Large ribosomal subunit protein uL3
- Chain lP
- 60S ribosomal protein L17
- Chain ld
- 60S ribosomal protein L31
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