IL_9B0S_404

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

9B0S|1|l5|A|3711, 9B0S|1|l5|A|3712, 9B0S|1|l5|U|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_404 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3049

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9B0S|1|l5|G|3710
9B0S|1|l5|A|3711
9B0S|1|l5|A|3712
9B0S|1|l5|U|3713
9B0S|1|l5|G|3714
*
9B0S|1|l5|C|3739
9B0S|1|l5|G|3740
9B0S|1|l5|C|3741

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lA

60S ribosomal protein L8

Chain pE

Transfer RNA; tRNA

Chain s2

Small subunit ribosomal RNA; SSU rRNA