IL_9B0S_405
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_405 not in the Motif Atlas
- Homologous match to IL_8P9A_316
- Geometric discrepancy: 0.1766
- The information below is about IL_8P9A_316
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.1
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9B0S|1|l5|U|3715
9B0S|1|l5|C|3716
9B0S|1|l5|A|3717
9B0S|1|l5|A|3718
9B0S|1|l5|A|3719
9B0S|1|l5|G|3720
9B0S|1|l5|U|3721
*
9B0S|1|l5|A|3732
9B0S|1|l5|A|3733
9B0S|1|l5|U|3734
9B0S|1|l5|G|3735
9B0S|1|l5|A|3736
9B0S|1|l5|A|3737
9B0S|1|l5|G|3738
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain lA
- 60S ribosomal protein L8
- Chain li
- 60S ribosomal protein L36
- Chain lo
- 60S ribosomal protein L36a
- Chain pE
- Transfer RNA; tRNA
Coloring options: