IL_9B0S_442

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_442 not in the Motif Atlas

Geometric match to IL_8C3A_444

Geometric discrepancy: 0.206

The information below is about IL_8C3A_444

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

9B0S|1|l5|G|4743
9B0S|1|l5|A|4744
9B0S|1|l5|G|4745
9B0S|1|l5|C|4746
*
9B0S|1|l5|G|4954
9B0S|1|l5|A|4955
9B0S|1|l5|A|4956
9B0S|1|l5|C|4957

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain l8

5.8S ribosomal RNA; 5.8S rRNA