IL_9B0S_450

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_450 not in the Motif Atlas

Homologous match to IL_8CRE_135

Geometric discrepancy: 0.1658

The information below is about IL_8CRE_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9B0S|1|l5|U|4972
9B0S|1|l5|U|4973
9B0S|1|l5|C|4974
9B0S|1|l5|G|4975
*
9B0S|1|l5|C|4983
9B0S|1|l5|C|4984
9B0S|1|l5|U|4985
9B0S|1|l5|G|4986

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lB

Large ribosomal subunit protein uL3

Chain lP

60S ribosomal protein L17

Chain ld

60S ribosomal protein L31