IL_9B0S_466

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_466 not in the Motif Atlas

Homologous match to IL_8CRE_391

Geometric discrepancy: 0.1436

The information below is about IL_8CRE_391

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9B0S|1|s2|U|34
9B0S|1|s2|C|35
9B0S|1|s2|U|36
*
9B0S|1|s2|A|519
9B0S|1|s2|A|520
9B0S|1|s2|A|521

Current chains

Chain s2

18S rRNA [Homo sapiens]

Nearby chains

Chain sJ

40S ribosomal protein S9

Chain sY

40S ribosomal protein S24