IL_9B0S_472

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUU*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_472 not in the Motif Atlas

Geometric match to IL_8P9A_262

Geometric discrepancy: 0.1667

The information below is about IL_8P9A_262

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9B0S|1|s2|G|108
9B0S|1|s2|U|109
9B0S|1|s2|U|110
*
9B0S|1|s2|G|351
9B0S|1|s2|U|352
9B0S|1|s2|C|353

Current chains

Chain s2

18S rRNA [Homo sapiens]

Nearby chains

Chain sE

Small ribosomal subunit protein eS4, X isoform

Chain sI

40S ribosomal protein S8

Chain sL

40S ribosomal protein S11