IL_9B0S_494

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_494 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2286

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9B0S|1|s2|A|533
9B0S|1|s2|G|534
*
9B0S|1|s2|C|549
9B0S|1|s2|C|550
9B0S|1|s2|U|551

Current chains

Chain s2

18S rRNA [Homo sapiens]

Nearby chains

Chain cH

Endothelial differentiation-related factor 1

Chain se

Small ribosomal subunit protein eS30