IL_9B0S_511
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGCC*GAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_511 not in the Motif Atlas
- Homologous match to IL_8CRE_433
- Geometric discrepancy: 0.0838
- The information below is about IL_8CRE_433
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
9B0S|1|s2|G|928
9B0S|1|s2|G|929
9B0S|1|s2|C|930
9B0S|1|s2|C|931
*
9B0S|1|s2|G|1010
9B0S|1|s2|A|1011
9B0S|1|s2|A|1012
9B0S|1|s2|U|1013
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain lc
- 60S ribosomal protein L30
- Chain sB
- 40S ribosomal protein S3a
- Chain sN
- 40S ribosomal protein S13
- Chain sb
- Small ribosomal subunit protein eS27
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