IL_9B0S_518
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_518 not in the Motif Atlas
- Homologous match to IL_8CRE_440
- Geometric discrepancy: 0.1143
- The information below is about IL_8CRE_440
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
9B0S|1|s2|C|1098
9B0S|1|s2|G|1099
9B0S|1|s2|A|1100
9B0S|1|s2|U|1101
*
9B0S|1|s2|G|1131
9B0S|1|s2|C|1132
9B0S|1|s2|A|1133
9B0S|1|s2|G|1134
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain sA
- 40S ribosomal protein SA
- Chain sB
- 40S ribosomal protein S3a
- Chain sN
- 40S ribosomal protein S13
- Chain sR
- 40S ribosomal protein S17
- Chain sa
- 40S ribosomal protein S26
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