IL_9B0S_525
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_525 not in the Motif Atlas
- Homologous match to IL_8P9A_432
- Geometric discrepancy: 0.1122
- The information below is about IL_8P9A_432
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
9B0S|1|s2|C|1230
9B0S|1|s2|C|1231
9B0S|1|s2|U|1232
*
9B0S|1|s2|G|1526
9B0S|1|s2|C|1527
9B0S|1|s2|G|1528
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain pE
- Transfer RNA; tRNA
- Chain sQ
- Small ribosomal subunit protein uS9
- Chain sS
- 40S ribosomal protein S18
- Chain sT
- 40S ribosomal protein S19
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