IL_9B0S_556

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_556 not in the Motif Atlas

Geometric match to IL_4E48_001

Geometric discrepancy: 0.0816

The information below is about IL_4E48_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9B0S|1|s2|C|1739
9B0S|1|s2|C|1740
9B0S|1|s2|U|1741
*
9B0S|1|s2|A|1793
9B0S|1|s2|C|1794
9B0S|1|s2|G|1795

Current chains

Chain s2

18S rRNA [Homo sapiens]

Nearby chains

Chain sG

40S ribosomal protein S6

Chain sI

40S ribosomal protein S8